Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKJ01980.1Nitrogen regulation protein ntrY. (549 aa)    
Predicted Functional Partners:
AKJ01983.1
Multimodular transpeptidase-transglycosylase.
       0.776
AKJ01981.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA.
       0.773
AKJ01982.1
FG-GAP repeat protein.
       0.773
AKJ05090.1
Response regulator.
  
 
 
 0.759
AKJ02691.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
 
 
 0.748
AKJ06433.1
DNA-binding response regulator.
  
 
   0.747
AKJ05453.1
CoB--CoM heterodisulfide reductase subunit A.
  
 
   0.741
AKI98510.1
Two-component sensor histidine kinase.
  
 
 
 0.718
AKJ08133.1
Putative two-component system response regulator.
  
   
 0.718
AKJ06357.1
DNA-binding response regulator.
 
 
   0.708
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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