Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01984.1TPR repeat protein. (349 aa)    
Predicted Functional Partners:
AKJ01576.1
Adenylate cyclase.
 
 
 0.792
AKJ01986.1
Hypothetical protein.
       0.773
AKJ02405.1
TPR repeat protein.
  
 
   0.773
AKJ04298.1
Tetratricopeptide repeat family.
 
   0.770
AKJ02757.1
TPR domain protein, putative component of TonB system.
 
   0.765
AKJ05797.1
TPR repeat protein.
 
     0.761
AKJ08293.1
TPR repeat protein.
 
   0.754
AKJ02704.1
Hypothetical protein.
 
 
 0.749
AKJ02628.1
TPR domain protein, putative component of TonB system.
 
     0.739
AKJ03134.1
Tetratricopeptide repeat protein.
 
     0.734
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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