AKJ02021.1 protein (Archangium gephyra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AKJ02021.1

RNA-2',3'-PO4:RNA-5'-OH ligase. (385 aa)

Predicted Functional Partners:

AKJ02020.1

0.783

AKJ02244.1

0.747

rtcA

0.716

rtcA-2

0.673

AKJ02022.1

0.428

Your Current Organism:

Archangium gephyra

NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKJ02020.1	AKJ02021.1	AA314_03646	AA314_03647	Hypothetical protein.	RNA-2',3'-PO4:RNA-5'-OH ligase.	0.783
AKJ02020.1	AKJ02022.1	AA314_03646	AA314_03648	Hypothetical protein.	Membrane-bound lytic murein transglycosylase D precursor.	0.444
AKJ02021.1	AKJ02020.1	AA314_03647	AA314_03646	RNA-2',3'-PO4:RNA-5'-OH ligase.	Hypothetical protein.	0.783
AKJ02021.1	AKJ02022.1	AA314_03647	AA314_03648	RNA-2',3'-PO4:RNA-5'-OH ligase.	Membrane-bound lytic murein transglycosylase D precursor.	0.428
AKJ02021.1	AKJ02244.1	AA314_03647	AA314_03870	RNA-2',3'-PO4:RNA-5'-OH ligase.	Transcriptional regulatory protein RtcR.	0.747
AKJ02021.1	rtcA	AA314_03647	AA314_03872	RNA-2',3'-PO4:RNA-5'-OH ligase.	RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	0.716
AKJ02021.1	rtcA-2	AA314_03647	AA314_05638	RNA-2',3'-PO4:RNA-5'-OH ligase.	RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	0.673
AKJ02022.1	AKJ02020.1	AA314_03648	AA314_03646	Membrane-bound lytic murein transglycosylase D precursor.	Hypothetical protein.	0.444
AKJ02022.1	AKJ02021.1	AA314_03648	AA314_03647	Membrane-bound lytic murein transglycosylase D precursor.	RNA-2',3'-PO4:RNA-5'-OH ligase.	0.428
AKJ02244.1	AKJ02021.1	AA314_03870	AA314_03647	Transcriptional regulatory protein RtcR.	RNA-2',3'-PO4:RNA-5'-OH ligase.	0.747
AKJ02244.1	rtcA	AA314_03870	AA314_03872	Transcriptional regulatory protein RtcR.	RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	0.898
AKJ02244.1	rtcA-2	AA314_03870	AA314_05638	Transcriptional regulatory protein RtcR.	RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	0.813
rtcA	AKJ02021.1	AA314_03872	AA314_03647	RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	RNA-2',3'-PO4:RNA-5'-OH ligase.	0.716
rtcA	AKJ02244.1	AA314_03872	AA314_03870	RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	Transcriptional regulatory protein RtcR.	0.898
rtcA-2	AKJ02021.1	AA314_05638	AA314_03647	RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	RNA-2',3'-PO4:RNA-5'-OH ligase.	0.673
rtcA-2	AKJ02244.1	AA314_05638	AA314_03870	RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.	Transcriptional regulatory protein RtcR.	0.813