Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02029.1Putative lipoprotein. (98 aa)    
Predicted Functional Partners:
AKJ06657.1
Type IV pilin PilA.
  
  
 0.589
AKJ02030.1
Hypothetical protein.
       0.572
AKJ00742.1
Hypothetical protein.
  
  
 0.532
AKJ07739.1
Hypothetical protein.
  
  
 0.532
AKJ00743.1
Hypothetical protein.
  
  
 0.526
AKJ01713.1
Hypothetical protein.
  
  
 0.526
AKJ07740.1
Hypothetical protein.
  
  
 0.526
AKJ02031.1
Hypothetical protein.
       0.462
AKJ02032.1
ATP-dependent 23S rRNA helicase DbpA; Belongs to the DEAD box helicase family.
       0.443
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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