STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02029.1Putative lipoprotein. (98 aa)    
Predicted Functional Partners:
AKJ02030.1
Hypothetical protein.
       0.572
AKJ06657.1
Type IV pilin PilA.
  
  
 0.540
AKJ00742.1
Hypothetical protein.
  
  
 0.512
AKJ07739.1
Hypothetical protein.
  
  
 0.512
AKJ00743.1
Hypothetical protein.
  
  
 0.504
AKJ01713.1
Hypothetical protein.
  
  
 0.504
AKJ07740.1
Hypothetical protein.
  
  
 0.504
AKJ02031.1
Hypothetical protein.
       0.462
AKJ02032.1
ATP-dependent 23S rRNA helicase DbpA; Belongs to the DEAD box helicase family.
       0.443
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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