STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02067.1Hydroxymethylpyrimidine ABC transporter, substrate-binding component. (324 aa)    
Predicted Functional Partners:
AKI99618.1
ABC-type sulfate transporter, permease protein.
 
  
 0.724
AKI99619.1
ABC-type sulfate transporter, ATPase component.
 
  
 0.694
AKJ03541.1
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
 
  
 0.658
AKJ02066.1
Sensory box histidine kinase/response regulator.
       0.656
AKJ03542.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
  
 0.639
AKJ02068.1
Hypothetical protein.
       0.547
AKJ06547.1
ABC-type nitrate/sulfonate/bicarbonate transport system protein.
  
     0.516
AKJ02739.1
Alkanal monooxygenase alpha chain.
  
  
 0.505
AKI98733.1
NADPH-dependent FMN reductase.
  
  
 0.437
AKJ02866.1
Putative reductase.
  
  
 0.437
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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