STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02078.1Retron-type RNA-directed DNA polymerase. (474 aa)    
Predicted Functional Partners:
AKJ02776.1
SWIM zinc finger domain protein.
 
     0.781
AKJ07418.1
Zinc finger, SWIM-type protein.
 
     0.781
AKJ07419.1
Hypothetical protein.
 
     0.780
AKI99114.1
SWIM zinc finger domain protein.
 
     0.778
AKI99522.1
Hypothetical protein.
  
     0.597
AKJ02079.1
Putative methyltransferase.
       0.508
AKI99914.1
Phage protein.
  
     0.456
AKJ02077.1
Oxidoreductase, short chain dehydrogenase/reductase family.
       0.425
AKJ07847.1
Hypothetical protein.
  
     0.410
AKI98877.1
Rhs-family protein.
  
    0.406
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.