Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AKJ02078.1Retron-type RNA-directed DNA polymerase. (474 aa)    
Predicted Functional Partners:
AKJ02776.1
SWIM zinc finger domain protein.
 
     0.781
AKJ07418.1
Zinc finger, SWIM-type protein.
 
     0.781
AKJ07419.1
Hypothetical protein.
 
     0.779
AKI99114.1
SWIM zinc finger domain protein.
 
     0.778
AKI99522.1
Hypothetical protein.
  
     0.597
AKJ02079.1
Putative methyltransferase.
       0.508
AKI99914.1
Phage protein.
  
     0.456
AKJ00085.1
Hypothetical protein.
  
    0.426
AKJ02077.1
Oxidoreductase, short chain dehydrogenase/reductase family.
       0.425
mnmE
GTPase and tRNA-U34 5-formylation enzyme TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.414
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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