STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl-diphosphate delta-isomerase, FMN-dependent; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (352 aa)    
Predicted Functional Partners:
AKJ02187.1
Diphosphomevalonate decarboxylase.
 
  
 0.989
AKJ00239.1
Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.926
AKJ03510.1
Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.926
AKJ02185.1
Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
   
 0.920
AKJ02692.1
Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.920
AKJ03731.1
Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.912
AKJ02186.1
Mevalonate kinase.
 
   
 0.895
AKJ02188.1
Phosphomevalonate kinase.
   
 0.849
AKJ00242.1
Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
   
 0.793
AKJ00266.1
Hydroxymethylglutaryl-CoA synthase.
 
  
 0.726
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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