Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02366.1Transcriptional regulator. (314 aa)    
Predicted Functional Partners:
AKJ02367.1
Transcriptional regulator, AraC family.
 
    
0.660
AKI98442.1
Transcriptional regulator, AraC family protein.
 
 
 0.464
AKJ02365.1
Putative Ig-like domain protein.
       0.463
AKJ05015.1
Transcriptional regulator, AraC family.
 
 
 0.431
AKI99959.1
Transcriptional regulator, AraC family.
 
 
 0.424
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.423
AKJ06334.1
Transcriptional regulator, AraC family.
 
 
 0.423
AKJ00607.1
Transcriptional regulator, AraC family.
 
 
 0.415
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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