Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ02369.1Membrane protein. (323 aa)    
Predicted Functional Partners:
AKJ01921.1
Hypothetical protein.
  
     0.585
AKI98422.1
Putative metal-dependent membrane protease.
  
    0.503
AKI99634.1
CAAX amino terminal protease family protein.
  
    0.503
AKJ03085.1
CAAX amino terminal protease family protein.
  
    0.503
AKJ05260.1
CAAX amino terminal protease family protein.
  
    0.503
AKJ06896.1
Abortive infection protein.
  
    0.503
AKJ07121.1
Abortive infection protein.
  
    0.503
AKJ04996.1
Outer membrane receptor protein, mostly Fe transport.
 
  
 0.432
AKJ02368.1
Beta-lactamase.
       0.431
AKJ02213.1
Peptidase, S41 family.
  
     0.425
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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