Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02437.1Hypothetical protein. (64 aa)    
Predicted Functional Partners:
AKJ02438.1
Hypothetical protein.
     
 0.655
AKJ02435.1
Hypothetical protein.
       0.511
AKJ02440.1
Stress response; Belongs to the sigma-70 factor family.
  
    0.508
AKJ02433.1
Hypothetical protein.
       0.504
AKJ02434.1
DNA helicase.
       0.504
AKJ02436.1
Hypothetical protein.
       0.504
nhaA
Na+/H+ antiporter NhaA type; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
   
    0.491
AKJ02429.1
Ribonucleotide reductase of class III; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
       0.488
AKJ02430.1
Hypothetical protein.
       0.488
AKJ02431.1
Hypothetical protein.
       0.488
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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