Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02438.1Hypothetical protein. (287 aa)    
Predicted Functional Partners:
AKJ02437.1
Hypothetical protein.
     
 0.655
AKJ01715.1
Type IV fimbrial biogenesis protein PilY1.
  
     0.633
AKI98681.1
Sulfur carrier protein adenylyltransferase ThiF.
  
   0.632
AKJ04376.1
Sulfur carrier protein adenylyltransferase ThiF.
  
   0.632
AKJ07823.1
Cna B domain protein.
  
     0.607
AKJ00611.1
Type IV fimbrial biogenesis protein PilY1.
  
     0.529
AKJ04409.1
Type IV fimbrial biogenesis protein PilY1.
  
     0.528
AKJ07742.1
Type IV fimbrial biogenesis protein PilY1.
  
     0.519
AKJ02439.1
Serine/threonine protein kinase.
       0.504
AKJ02440.1
Stress response; Belongs to the sigma-70 factor family.
       0.504
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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