Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02475.1Hypothetical protein. (272 aa)    
Predicted Functional Partners:
AKJ02476.1
Transcriptional regulator, ArsR family.
 
  
 0.873
AKJ00354.1
Putative hydrolase.
  
     0.596
AKJ07296.1
Hypothetical protein.
  
     0.562
AKJ06957.1
Transcriptional regulator, TetR family.
  
     0.508
AKJ02477.1
Internalin, putative.
       0.506
AKJ08200.1
Hypothetical protein.
  
     0.449
AKJ02474.1
Sensory box histidine kinase.
       0.439
AKJ02357.1
Transcriptional regulator, TetR family.
  
     0.438
AKJ06790.1
Hypothetical protein.
  
     0.434
AKJ02473.1
Hypothetical protein.
       0.421
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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