Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02477.1Internalin, putative. (1587 aa)    
Predicted Functional Partners:
AKJ00475.1
Flagellar motor rotation protein MotB.
  
 
 0.704
AKJ06332.1
TonB family protein.
 
 
 
 0.549
AKJ08187.1
Flagellar motor rotation protein MotB.
  
 
 0.549
AKJ02475.1
Hypothetical protein.
       0.506
AKJ02476.1
Transcriptional regulator, ArsR family.
       0.506
AKJ05673.1
Putative lipoprotein.
 
 
 0.504
AKJ04524.1
Hypothetical protein.
 
 
 0.483
AKJ01264.1
Hypothetical protein.
  
     0.479
AKJ00063.1
PE family protein.
  
 
   0.464
AKJ04118.1
Hypothetical protein.
  
     0.463
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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