Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKJ02537.1 | AKJ02541.1 | AA314_04163 | AA314_04167 | Riboflavin synthase. | Cytosol aminopeptidase. | 0.582 |
AKJ02537.1 | AKJ02542.1 | AA314_04163 | AA314_04168 | Riboflavin synthase. | Chemotaxis regulator. | 0.413 |
AKJ02537.1 | AKJ02543.1 | AA314_04163 | AA314_04169 | Riboflavin synthase. | Signal transduction histidine kinase CheA. | 0.413 |
AKJ02537.1 | nusB | AA314_04163 | AA314_04166 | Riboflavin synthase. | Transcription termination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.587 |
AKJ02537.1 | ribB | AA314_04163 | AA314_04164 | Riboflavin synthase. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.999 |
AKJ02537.1 | ribH | AA314_04163 | AA314_04165 | Riboflavin synthase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.999 |
AKJ02541.1 | AKJ02537.1 | AA314_04167 | AA314_04163 | Cytosol aminopeptidase. | Riboflavin synthase. | 0.582 |
AKJ02541.1 | AKJ02542.1 | AA314_04167 | AA314_04168 | Cytosol aminopeptidase. | Chemotaxis regulator. | 0.613 |
AKJ02541.1 | AKJ02543.1 | AA314_04167 | AA314_04169 | Cytosol aminopeptidase. | Signal transduction histidine kinase CheA. | 0.613 |
AKJ02541.1 | AKJ02544.1 | AA314_04167 | AA314_04170 | Cytosol aminopeptidase. | Positive regulator of CheA protein activity. | 0.526 |
AKJ02541.1 | AKJ02545.1 | AA314_04167 | AA314_04171 | Cytosol aminopeptidase. | Positive regulator of CheA protein activity. | 0.526 |
AKJ02541.1 | AKJ02546.1 | AA314_04167 | AA314_04172 | Cytosol aminopeptidase. | HEAT repeat protein. | 0.526 |
AKJ02541.1 | cheB-2 | AA314_04167 | AA314_04174 | Cytosol aminopeptidase. | Chemotaxis response regulator protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.500 |
AKJ02541.1 | nusB | AA314_04167 | AA314_04166 | Cytosol aminopeptidase. | Transcription termination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.807 |
AKJ02541.1 | ribB | AA314_04167 | AA314_04164 | Cytosol aminopeptidase. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.625 |
AKJ02541.1 | ribH | AA314_04167 | AA314_04165 | Cytosol aminopeptidase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.827 |
AKJ02542.1 | AKJ02537.1 | AA314_04168 | AA314_04163 | Chemotaxis regulator. | Riboflavin synthase. | 0.413 |
AKJ02542.1 | AKJ02541.1 | AA314_04168 | AA314_04167 | Chemotaxis regulator. | Cytosol aminopeptidase. | 0.613 |
AKJ02542.1 | AKJ02543.1 | AA314_04168 | AA314_04169 | Chemotaxis regulator. | Signal transduction histidine kinase CheA. | 0.949 |
AKJ02542.1 | AKJ02544.1 | AA314_04168 | AA314_04170 | Chemotaxis regulator. | Positive regulator of CheA protein activity. | 0.928 |
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