STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02588.1Hypothetical protein. (339 aa)    
Predicted Functional Partners:
AKJ02589.1
Hypothetical protein.
       0.697
AKI99770.1
Hypothetical protein.
  
 
   0.668
AKJ04105.1
OmpA domain protein.
  
     0.648
AKJ02583.1
Outer membrane protein H precursor.
  
 
 0.635
AKI99270.1
Peptidase C14 caspase catalytic subunit p20.
  
 
   0.628
AKJ02947.1
Outer membrane protein A precursor.
  
     0.610
AKJ06204.1
OmpA domain protein.
  
     0.593
AKJ04614.1
Outer membrane protein A precursor.
  
     0.583
AKJ08211.1
Surface antigen protein.
  
     0.578
AKJ05847.1
tolB protein precursor protein.
 
 
 0.568
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.