Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02650.1Serine esterase, putative. (174 aa)    
Predicted Functional Partners:
AKI98711.1
Spore photoproduct lyase.
  
     0.461
AKJ03192.1
Peptidase S1 and S6, chymotrypsin/Hap.
  
 
   0.458
AKJ03502.1
UV DNA damage endonuclease.
  
     0.451
AKJ02651.1
Helicase.
   
   0.446
AKJ06144.1
Glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
  
     0.418
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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