STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02691.1Serine phosphatase RsbU, regulator of sigma subunit. (129 aa)    
Predicted Functional Partners:
AKJ03209.1
Multi-sensor signal transduction histidine kinase.
 
 
 0.862
AKJ08284.1
Sensory box histidine kinase.
 
 
 0.861
AKI99983.1
Sensory box histidine kinase.
 
 
 0.845
AKJ07310.1
Periplasmic sensor signal transduction histidine kinase.
 
 
 0.840
AKJ08110.1
Histidine protein kinase AsgD.
 
   0.840
AKI99519.1
Sensory box histidine kinase.
 
 
 0.837
AKJ00885.1
Diguanylate cyclase/phosphodiesterase.
 
 
 0.835
AKJ01025.1
Phosphate regulon sensor protein PhoR.
 
 
 0.835
AKJ00442.1
Tetratricopeptide repeat family.
 
   0.833
AKJ01397.1
Sensory box histidine kinase.
 
 
 0.833
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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