Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02699.1Hypothetical protein. (86 aa)    
Predicted Functional Partners:
AKJ02698.1
3-oxoacyl-[acyl-carrier protein] reductase.
      0.934
AKJ02697.1
3-oxoacyl-[acyl-carrier protein] reductase.
   
   0.753
AKJ02700.1
Hypothetical protein.
       0.636
AKI99740.1
Hypothetical protein.
  
     0.594
AKJ02424.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.589
AKJ02806.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.589
AKJ02809.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.589
AKJ07441.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.581
AKJ07051.1
Hypothetical protein.
  
     0.505
AKJ02595.1
Hypothetical protein.
  
     0.488
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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