Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ02702.1OmpA domain protein. (641 aa)    
Predicted Functional Partners:
AKJ04614.1
Outer membrane protein A precursor.
  
     0.723
AKJ08187.1
Flagellar motor rotation protein MotB.
  
 
 0.721
AKJ02701.1
Hypothetical protein.
       0.648
AKJ02714.1
Lytic transglycosylase, catalytic.
  
     0.576
AKJ07368.1
Lytic transglycosylase, catalytic.
  
     0.550
AKJ06423.1
Flagellar biosynthesis protein FliR.
  
 
 
 0.477
AKJ05112.1
High-affnity carbon uptake protein Hat/HatR.
  
   0.437
AKJ03149.1
Soluble lytic murein transglycosylase precursor.
 
  
 0.434
AKJ05818.1
Flagellar biosynthesis protein FlhB.
  
 
 
 0.431
AKJ01489.1
Soluble lytic murein transglycosylase precursor.
 
  
 0.425
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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