STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02756.1Serine phosphatase RsbU, regulator of sigma subunit. (580 aa)    
Predicted Functional Partners:
AKJ05823.1
Flagellar motor switch protein FliM.
  
    0.930
AKJ02757.1
TPR domain protein, putative component of TonB system.
 
    0.845
AKJ07736.1
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.832
AKI99572.1
Putative SigmaB asociated two-component system sensor protein.
  
 
 0.815
AKJ07727.1
Serine-protein kinase RsbW.
 
 
 0.800
AKI99569.1
RsbS, negative regulator of sigma-B.
 
 
 0.785
AKI99568.1
RsbR, positive regulator of sigma-B.
 
 
 0.779
AKJ02758.1
Hypothetical protein.
       0.773
AKJ06391.1
Putative anti-sigma factor antagonist.
  
 
 0.734
AKI99570.1
Anti-sigma B factor RsbT.
 
 
 0.707
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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