Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKJ02777.1Retron-type RNA-directed DNA polymerase. (322 aa)    
Predicted Functional Partners:
AKJ02778.1
Retron-type RNA-directed DNA polymerase.
     0.955
AKJ02776.1
SWIM zinc finger domain protein.
 
     0.872
AKJ07418.1
Zinc finger, SWIM-type protein.
 
     0.782
AKI99114.1
SWIM zinc finger domain protein.
 
     0.781
AKJ07419.1
Hypothetical protein.
 
     0.781
AKI99522.1
Hypothetical protein.
  
     0.614
AKJ07847.1
Hypothetical protein.
  
     0.519
AKJ02774.1
Putative chaperonin.
 
     0.483
AKJ02773.1
Hypothetical protein.
 
     0.459
AKI99914.1
Phage protein.
  
     0.445
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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