Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02876.1Hypothetical protein. (345 aa)    
Predicted Functional Partners:
AKJ02875.1
Manganese-dependent protein-tyrosine phosphatase.
       0.759
AKJ02874.1
Hypothetical protein.
       0.734
AKJ02194.1
Hypothetical protein.
  
     0.704
AKJ06403.1
Membrane protein.
 
  
 0.632
AKJ02410.1
TPR domain protein, putative component of TonB system.
  
     0.531
AKJ06643.1
TPR domain protein, putative.
  
     0.527
AKJ00485.1
Hypothetical protein.
  
     0.506
AKJ02600.1
Cell division protein FtsK.
 
  
 0.496
AKJ01954.1
Hypothetical protein.
  
     0.488
AKJ01596.1
Dolichol-phosphate mannosyltransferase.
 
  
 0.487
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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