Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02893.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
AKJ02896.1
Hypothetical protein.
 
 
 0.996
AKJ02891.1
NHL repeat domain protein.
 
 
 0.993
AKJ02900.1
Phage tail sheath protein FI.
 
 
 0.992
AKJ02892.1
Hypothetical protein.
 
 
 0.990
AKJ02902.1
Phage tail sheath protein FI.
 
 
 0.989
AKJ02898.1
Hypothetical protein.
 
 
 0.983
AKJ02899.1
Hypothetical protein.
 
 
 0.976
AKJ02901.1
Hypothetical protein.
 
 
 0.976
AKJ07350.1
Phage tail sheath protein FI.
 
 
 0.971
AKJ07343.1
Hypothetical protein.
 
 
 0.965
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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