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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02901.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
AKJ02900.1
Phage tail sheath protein FI.
 
 
 0.978
AKJ02893.1
Hypothetical protein.
 
 
 0.976
AKJ02896.1
Hypothetical protein.
 
 
 
 0.976
AKJ02898.1
Hypothetical protein.
 
   0.975
AKJ02892.1
Hypothetical protein.
 
 
 
 0.973
AKJ02902.1
Phage tail sheath protein FI.
 
 
 0.970
AKJ02891.1
NHL repeat domain protein.
 
 
   0.955
AKJ02895.1
Hypothetical protein.
 
  
 0.950
AKJ07347.1
Hypothetical protein.
 
 
 0.934
AKJ02904.1
Hypothetical protein.
 
     0.922
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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