Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02933.1Hypothetical protein. (612 aa)    
Predicted Functional Partners:
AKJ02934.1
Carboxypeptidase T precursor.
       0.773
AKJ01068.1
Choline-sulfatase.
 
   0.710
AKJ06169.1
Hypothetical protein.
  
     0.696
AKJ03929.1
Choline-sulfatase.
 
   0.665
AKJ02931.1
Hypothetical protein.
       0.636
AKJ07647.1
Choline-sulfatase.
 
   0.622
AKJ01069.1
Choline-sulfatase.
 
   0.581
AKJ02935.1
Acetyltransferase.
       0.568
AKI98782.1
Dimethylhistidine N-methyltransferase.
 
  
 0.535
AKJ00049.1
ATP-binding protein syrD.
  
  
 0.509
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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