STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03024.1Polysaccharide deacetylase. (379 aa)    
Predicted Functional Partners:
AKJ03025.1
Lipopolysaccharide biosynthesis protein WzxC.
     
 0.815
AKJ03027.1
Glycosyltransferase.
 
   
 0.802
AKJ07397.1
Putative membrane protein of ExoQ family protein.
 
   
 0.766
AKJ03313.1
Glycosyl transferase, group 2 family protein.
 
  
 0.742
AKJ05019.1
Putative membrane protein of ExoQ family protein.
 
   
 0.727
AKJ04655.1
Cellulose biosynthesis.
 
     0.706
AKJ03028.1
Glycosyltransferase.
 
   
 0.704
AKJ05432.1
Hypothetical protein.
 
   
 0.622
AKJ04653.1
Cellulose biosynthesis protein.
 
     0.617
AKJ03583.1
Endo-1,4-beta-xylanase A precursor.
  
     0.612
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.