Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03047.1Hypothetical protein. (532 aa)    
Predicted Functional Partners:
AKJ05594.1
Hypothetical protein.
 
     0.635
AKJ03048.1
Lipase.
 
     0.604
AKJ08302.1
Hypothetical protein.
  
     0.525
AKJ03190.1
DNA gyrase subunit A.
  
     0.463
AKJ03355.1
N-formimidoyl fortimicin A synthase.
 
     0.436
AKJ04095.1
Hypothetical protein.
  
     0.436
AKJ07985.1
Glutamate synthase [NADPH] large chain.
  
     0.424
AKJ03911.1
NHL repeat containing protein.
  
     0.423
AKJ07333.1
Trypsin domain protein; Belongs to the peptidase S1B family.
 
     0.417
AKJ04524.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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