Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03048.1Lipase. (272 aa)    
Predicted Functional Partners:
AKJ03190.1
DNA gyrase subunit A.
  
     0.691
AKJ06371.1
Hypothetical protein.
  
     0.667
AKJ05944.1
Hypothetical protein.
  
     0.635
AKJ03047.1
Hypothetical protein.
 
     0.604
AKJ07333.1
Trypsin domain protein; Belongs to the peptidase S1B family.
  
     0.602
AKJ01860.1
Hypothetical protein.
  
     0.563
AKJ04524.1
Hypothetical protein.
  
     0.547
AKJ07506.1
SusC, outer membrane protein.
  
     0.515
AKJ07508.1
Putative outer membrane protein.
  
     0.513
AKI98628.1
Lactonizing lipase precursor.
  
     0.495
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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