Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03080.1Alpha/beta hydrolase. (210 aa)    
Predicted Functional Partners:
AKJ06104.1
ATP-dependent DNA helicase.
  
     0.707
AKJ03078.1
Hypothetical protein.
       0.642
AKJ03079.1
Hypothetical protein.
       0.642
AKJ04020.1
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.567
AKJ07073.1
NifU protein.
  
     0.554
AKJ00822.1
Ferredoxin, 2Fe-2S.
 
     0.498
AKI98579.1
Hypothetical protein.
  
    0.492
AKJ07570.1
Hypothetical protein.
  
    0.492
AKJ03081.1
Protease; Belongs to the peptidase S8 family.
       0.483
AKJ03082.1
Hypothetical protein.
       0.483
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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