Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AKJ03138.1Sigma-54 dependent transcriptional regulator. (572 aa)    
Predicted Functional Partners:
AKJ05823.1
Flagellar motor switch protein FliM.
  
 
 0.882
AKJ06427.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
 
 0.697
AKJ03136.1
Deoxyadenosine kinase.
       0.671
AKJ03137.1
Hypothetical protein.
       0.671
AKJ00529.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.619
AKJ08495.1
Response regulator of zinc sigma-54-dependent two-component system.
  
     0.610
AKJ05826.1
Flagellum-specific ATP synthase FliI.
  
 
 0.606
AKJ04072.1
Hypothetical protein.
  
 
 0.593
AKJ05827.1
Flagellar assembly protein FliH, putative.
  
 
 0.593
AKI99219.1
Sensor histidine kinase/response regulator.
  
 
 0.529
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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