Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKJ03168.1Allantoinase. (421 aa)    
Predicted Functional Partners:
alc
Allantoicase; Belongs to the allantoicase family.
 
 0.997
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.971
AKJ03170.1
5-Hydroxyisourate Hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.951
AKJ06328.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.920
AKJ03171.1
Ureidoglycolate hydrolase.
 
  
 0.842
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
 
 0.823
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.792
AKJ01908.1
Glutamate synthase [NADPH] small chain.
  
  
 0.778
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
  
  
 0.765
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
  
 0.764
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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