Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
alcAllantoicase; Belongs to the allantoicase family. (520 aa)    
Predicted Functional Partners:
AKJ03171.1
Ureidoglycolate hydrolase.
 
 0.998
AKJ03168.1
Allantoinase.
 
 0.997
AKJ03170.1
5-Hydroxyisourate Hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.978
ureB
Urease beta subunit; Belongs to the urease beta subunit family.
 
  
 0.939
ureC
Urease alpha subunit.
 
  
  0.930
AKJ03166.1
Membrane protein.
 
    0.915
AKJ05939.1
Hypothetical protein.
 
     0.803
AKJ01515.1
Xanthine dehydrogenase, molybdenum binding subunit.
 
   
 0.615
AKJ01936.1
Copper binding protein, plastocyanin/azurin family.
  
    0.596
AKJ05357.1
Copper binding protein, plastocyanin/azurin family.
  
    0.596
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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