STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alcAllantoicase; Belongs to the allantoicase family. (520 aa)    
Predicted Functional Partners:
AKJ03168.1
Allantoinase.
 
 0.998
AKJ03171.1
Ureidoglycolate hydrolase.
 
  0.998
AKJ03170.1
5-Hydroxyisourate Hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.975
ureB
Urease beta subunit; Belongs to the urease beta subunit family.
 
  
 0.937
ureC
Urease alpha subunit.
 
  
  0.927
AKJ03166.1
Membrane protein.
 
    0.911
AKJ05939.1
Hypothetical protein.
 
     0.793
AKJ00298.1
Uracil permease.
  
  
 0.635
AKJ01515.1
Xanthine dehydrogenase, molybdenum binding subunit.
 
  
 0.635
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
 0.602
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.