STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03171.1Ureidoglycolate hydrolase. (171 aa)    
Predicted Functional Partners:
alc
Allantoicase; Belongs to the allantoicase family.
 
 0.998
ureB
Urease beta subunit; Belongs to the urease beta subunit family.
 
  
 0.925
AKJ03170.1
5-Hydroxyisourate Hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
    0.914
AKJ03166.1
Membrane protein.
 
    0.904
ureC
Urease alpha subunit.
    
  0.903
AKJ03168.1
Allantoinase.
 
  
 0.842
AKJ07449.1
Malate synthase; Belongs to the malate synthase family.
    
 0.842
AKI99331.1
Serine--glyoxylate aminotransferase.
  
  
  0.828
AKJ07451.1
Isocitrate lyase.
     
 0.813
AKJ00183.1
Aromatic-amino-acid aminotransferase.
     
  0.800
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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