STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03181.1FHA domain protein. (180 aa)    
Predicted Functional Partners:
AKJ05515.1
FHA domain containing protein.
  
     0.768
AKJ05521.1
Adenylate cyclase.
  
     0.761
AKJ05798.1
FHA domain containing protein.
  
     0.716
AKJ04909.1
FHA domain containing protein.
  
     0.702
AKJ05685.1
Hypothetical protein.
  
     0.570
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.495
AKJ07943.1
Type II/IV secretion system protein.
  
     0.470
AKJ05799.1
Flagellar biosynthesis protein FlhA.
  
  
 0.458
AKJ06421.1
Flagellar biosynthesis protein FlhA.
  
  
 0.458
AKJ05829.1
Type III secretion bridge between inner and outermembrane lipoprotein.
  
  
 0.450
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.