Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03206.1Hypothetical protein. (593 aa)    
Predicted Functional Partners:
AKJ03207.1
Hypothetical protein.
  
  
 0.786
AKJ01632.1
Peptidase, M36.
  
     0.720
AKJ00732.1
Chlorosome protein H.
  
  
 0.714
AKJ04859.1
Hypothetical protein.
 
     0.621
AKJ06752.1
Hypothetical protein.
 
     0.596
AKJ03208.1
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone.
     
 0.590
AKJ01636.1
Hypothetical protein.
 
     0.558
AKJ06926.1
Hypothetical protein.
 
     0.538
AKJ03821.1
Hypothetical protein.
  
  
 0.515
AKJ04856.1
Cytochrome c, putative.
 
  
 0.474
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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