Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03212.1TonB family protein. (930 aa)    
Predicted Functional Partners:
AKJ02790.1
TonB-dependent receptor.
 
 
 0.888
AKJ06010.1
Nicel/Cobalt-specific TonB-dependent outer membrane receptor.
 
 
 0.871
AKI99358.1
TonB-dependent receptor.
 
 
 0.808
AKJ02786.1
Isochorismatase.
 
  
 0.792
AKJ07626.1
Tryptophan synthase alpha chain.
 
    0.779
AKJ05036.1
Adventurous gliding motility protein S.
 
 
 0.776
AKJ08211.1
Surface antigen protein.
 
    0.756
AKJ06332.1
TonB family protein.
 
 
0.750
AKJ03213.1
Putative lipoprotein.
       0.741
AKJ04296.1
Putative abductin-like protein.
 
 
 0.738
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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