Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKJ03227.1GGDEF domain protein. (668 aa)    
Predicted Functional Partners:
AKJ05961.1
Putative SigmaB asociated two-component system sensor protein.
  
 
 0.962
AKI99695.1
Putative SigmaB asociated two-component system sensor protein.
  
 
 0.955
AKI99496.1
PAS/PAC domain protein.
  
 
 0.949
AKJ03002.1
Circadian input kinase A.
 
 
 0.949
AKI98556.1
Chemotaxis protein methyltransferase CheR.
 
 
 0.942
AKJ00035.1
Hypothetical protein.
 
 
0.940
AKI99572.1
Putative SigmaB asociated two-component system sensor protein.
 
 
 0.922
AKJ04058.1
Two-component sensor histidine kinase.
  
 
 0.918
AKI99519.1
Sensory box histidine kinase.
 
 
 0.916
AKJ00610.1
Chemotaxis protein methyltransferase CheR.
 
 
 0.900
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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