STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03229.1Transcriptional regulator, TetR family. (244 aa)    
Predicted Functional Partners:
AKJ03230.1
Oxidoreductase.
 
     0.721
AKJ01645.1
Methionine ABC transporter ATP-binding protein.
  
     0.544
AKI98711.1
Spore photoproduct lyase.
  
     0.510
AKJ07441.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.476
AKJ03516.1
Hypothetical protein.
  
  
 0.461
vgb
Hypothetical protein; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid.
  
     0.445
AKJ07515.1
Microbial collagenase, secreted.
  
     0.432
AKJ03604.1
Hypothetical protein.
  
     0.429
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.414
AKJ02550.1
Phage tail length tape-measure protein.
  
     0.409
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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