Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03232.1Hypothetical protein. (425 aa)    
Predicted Functional Partners:
AKJ02885.1
ATPase, AAA family.
 
     0.777
AKJ07344.1
Hypothetical protein.
 
     0.777
AKJ02893.1
Hypothetical protein.
 
     0.776
AKJ06024.1
Hypothetical protein.
 
     0.776
AKJ07350.1
Phage tail sheath protein FI.
 
     0.776
AKJ02899.1
Hypothetical protein.
 
     0.775
AKJ02900.1
Phage tail sheath protein FI.
 
     0.775
AKJ02902.1
Phage tail sheath protein FI.
 
     0.775
AKJ02895.1
Hypothetical protein.
 
     0.774
AKJ07349.1
Hypothetical protein.
 
     0.774
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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