Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKJ03247.1Radical SAM domain protein. (636 aa)    
Predicted Functional Partners:
AKJ03246.1
Transcriptional regulator.
 
  
 0.838
AKI98390.1
Response regulator of zinc sigma-54-dependent two-component system.
  
  
 0.604
AKJ06888.1
Response regulator of zinc sigma-54-dependent two-component system.
  
  
 0.587
AKJ08413.1
Response regulator of zinc sigma-54-dependent two-component system.
  
  
 0.587
AKJ01789.1
Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.
   
  
 0.526
AKJ07690.1
Putative oxidoreductase.
 
  
 0.499
AKJ07008.1
UDP-galactose-lipid carrier transferase.
   
    0.495
AKI98479.1
Hypothetical protein.
  
  
 0.494
AKJ00472.1
Hypothetical protein.
  
  
 0.494
AKJ03014.1
Hypothetical protein.
  
  
 0.494
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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