Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKJ03255.1Transcriptional regulator, AfsR/DnrI/RedD family. (585 aa)    
Predicted Functional Partners:
AKJ03253.1
Transcriptional regulator, AraC family.
 
    0.776
AKJ03254.1
Hypothetical protein.
       0.773
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.543
AKI99328.1
Transcriptional regulator, LuxR family, putative.
 
  
 0.526
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.521
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.521
AKJ04468.1
Transcriptional regulator, LuxR family.
 
  
0.500
AKJ02848.1
DNA-binding response regulator KdpE.
  
     0.493
AKJ03784.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
  
 0.484
AKI98965.1
Tryptophan synthase alpha chain.
  
     0.474
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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