Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03276.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
AKJ06657.1
Type IV pilin PilA.
    
 0.912
AKJ06019.1
Type IV pilin PilA.
     
  0.900
AKJ03275.1
Hypothetical protein.
       0.590
AKJ03274.1
Hypothetical protein.
       0.570
AKJ00954.1
General secretion pathway protein F.
  
  
 0.563
AKJ05719.1
General secretion pathway protein F.
  
  
 0.563
AKJ06663.1
Type IV fimbrial assembly protein PilC.
  
  
 0.563
AKJ05726.1
Hypothetical protein.
  
 
 0.555
AKJ05518.1
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.537
AKJ00649.1
Type IV fimbrial assembly, ATPase PilB.
  
 
 0.529
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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