STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03353.1HlyB/MsbA family ABC transporter. (743 aa)    
Predicted Functional Partners:
AKJ03352.1
RND efflux membrane fusion protein.
 
 0.950
AKJ03351.1
Outer membrane component of multidrug efflux pump.
 
  
 0.925
AKJ00292.1
Sulfate permease.
  
     0.642
AKJ01690.1
Hypothetical protein.
  
 
 0.639
AKJ07928.1
Membrane fusion component of tripartite multidrug resistance system.
  
 
 0.639
AKJ03527.1
Putative RND efflux membrane fusion protein.
  
 
 0.554
AKJ00291.1
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.551
AKJ07137.1
Vitamin K-dependent gamma-carboxylase.
  
     0.546
AKJ07408.1
Hypothetical protein.
  
    0.532
AKJ04283.1
Heavy metal RND efflux outer membrane protein, CzcC family.
  
  
 0.496
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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