Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03372.1Translation initiation factor 2. (288 aa)    
Predicted Functional Partners:
AKI98677.1
Hypothetical protein.
 
    0.675
AKJ05726.1
Hypothetical protein.
  
   
 0.635
AKJ02667.1
Hypothetical protein.
  
     0.631
AKJ05725.1
General secretion pathway protein J.
  
     0.609
AKJ06650.1
Type IV pilus biogenesis protein PilP.
 
     0.599
AKJ05020.1
Hypothetical protein.
  
     0.576
AKJ03257.1
Adventurous gliding motility protein K.
 
     0.564
nusA
Transcription termination protein NusA; Participates in both transcription termination and antitermination.
 
    0.557
AKJ03373.1
Mannose-6-phosphate isomerase.
       0.551
AKJ05724.1
General secretion pathway protein I.
  
     0.551
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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