Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AKJ03406.1Twitching motility protein PilT. (344 aa)    
Predicted Functional Partners:
AKJ06663.1
Type IV fimbrial assembly protein PilC.
 
  
 0.849
AKJ06656.1
Leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.810
AKJ00954.1
General secretion pathway protein F.
 
  
 0.794
AKJ05719.1
General secretion pathway protein F.
 
  
 0.794
AKJ06653.1
Type IV pilus biogenesis protein PilM.
 
   
 0.758
AKJ02668.1
Type IV fimbrial assembly, ATPase PilB.
 
  
 0.718
AKJ07965.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
  
 0.716
AKJ06019.1
Type IV pilin PilA.
 
   
 0.692
AKJ00195.1
Type IV fimbrial assembly, ATPase PilB.
 
  
 0.684
AKJ06657.1
Type IV pilin PilA.
 
   
 0.674
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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