STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03411.1Transcriptional regulator, DeoR family. (234 aa)    
Predicted Functional Partners:
AKJ06859.1
Glutathione S-transferase.
     0.911
AKJ03412.1
Hypothetical protein.
 
     0.902
AKJ01033.1
Putative DNA-binding protein.
  
     0.710
AKJ01032.1
Putative DeoR-family transcriptional regulator.
  
     0.683
AKJ03410.1
Outer membrane protein A precursor.
       0.671
AKJ04817.1
Nucleoside-diphosphate-sugar epimerase.
  
     0.513
AKJ03409.1
Putative membrane protein.
       0.457
AKJ03413.1
Biotin synthesis protein BioC.
       0.447
AKJ04816.1
Transcriptional regulator lysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.437
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.429
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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