node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKJ03423.1 | rimM | AA314_05049 | AA314_05050 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.943 |
AKJ03423.1 | rplS | AA314_05049 | AA314_05052 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.938 |
AKJ03423.1 | rplT | AA314_05049 | AA314_05148 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.820 |
AKJ03423.1 | rpmE | AA314_05049 | AA314_03641 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | LSU ribosomal protein L31p; Binds the 23S rRNA. | 0.789 |
AKJ03423.1 | rpsD | AA314_05049 | AA314_04756 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.837 |
AKJ03423.1 | rpsI | AA314_05049 | AA314_03348 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | SSU ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family. | 0.801 |
AKJ03423.1 | rpsO | AA314_05049 | AA314_07883 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.838 |
AKJ03423.1 | rpsP | AA314_05049 | AA314_05048 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family. | 0.968 |
AKJ03423.1 | rpsR | AA314_05049 | AA314_03769 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.800 |
AKJ03423.1 | trmD | AA314_05049 | AA314_05051 | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | tRNA (Guanine37-N1) -methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.822 |
rimM | AKJ03423.1 | AA314_05050 | AA314_05049 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | 0.943 |
rimM | rplS | AA314_05050 | AA314_05052 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.947 |
rimM | rplT | AA314_05050 | AA314_05148 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.477 |
rimM | rpsD | AA314_05050 | AA314_04756 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.849 |
rimM | rpsI | AA314_05050 | AA314_03348 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | SSU ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family. | 0.786 |
rimM | rpsO | AA314_05050 | AA314_07883 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.666 |
rimM | rpsP | AA314_05050 | AA314_05048 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family. | 0.968 |
rimM | rpsR | AA314_05050 | AA314_03769 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.876 |
rimM | trmD | AA314_05050 | AA314_05051 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | tRNA (Guanine37-N1) -methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.977 |
rplS | AKJ03423.1 | AA314_05052 | AA314_05049 | LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | KH domain RNA binding protein YlqC; Belongs to the UPF0109 family. | 0.938 |