Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKJ00865.1 | AKJ01951.1 | AA314_02491 | AA314_03577 | Competence protein F like protein. | FHA/GGDEF domain protein. | 0.485 |
AKJ00865.1 | AKJ03428.1 | AA314_02491 | AA314_05054 | Competence protein F like protein. | Endonuclease; Belongs to the UPF0102 family. | 0.783 |
AKJ00865.1 | AKJ05040.1 | AA314_02491 | AA314_06666 | Competence protein F like protein. | DNA topoisomerase I. | 0.918 |
AKJ00865.1 | AKJ05518.1 | AA314_02491 | AA314_07144 | Competence protein F like protein. | DNA internalization-related competence protein ComEC/Rec2. | 0.895 |
AKJ00865.1 | AKJ05823.1 | AA314_02491 | AA314_07449 | Competence protein F like protein. | Flagellar motor switch protein FliM. | 0.714 |
AKJ00865.1 | ruvC | AA314_02491 | AA314_03881 | Competence protein F like protein. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.486 |
AKJ01951.1 | AKJ00865.1 | AA314_03577 | AA314_02491 | FHA/GGDEF domain protein. | Competence protein F like protein. | 0.485 |
AKJ01951.1 | AKJ03428.1 | AA314_03577 | AA314_05054 | FHA/GGDEF domain protein. | Endonuclease; Belongs to the UPF0102 family. | 0.452 |
AKJ01951.1 | AKJ05040.1 | AA314_03577 | AA314_06666 | FHA/GGDEF domain protein. | DNA topoisomerase I. | 0.463 |
AKJ01951.1 | AKJ05823.1 | AA314_03577 | AA314_07449 | FHA/GGDEF domain protein. | Flagellar motor switch protein FliM. | 0.861 |
AKJ02471.1 | AKJ03428.1 | AA314_04097 | AA314_05054 | Hypothetical protein. | Endonuclease; Belongs to the UPF0102 family. | 0.467 |
AKJ02471.1 | rplS | AA314_04097 | AA314_05052 | Hypothetical protein. | LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.801 |
AKJ02471.1 | ruvC | AA314_04097 | AA314_03881 | Hypothetical protein. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.418 |
AKJ03427.1 | AKJ03428.1 | AA314_05053 | AA314_05054 | Chromosome partition protein smc. | Endonuclease; Belongs to the UPF0102 family. | 0.656 |
AKJ03427.1 | rplS | AA314_05053 | AA314_05052 | Chromosome partition protein smc. | LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.546 |
AKJ03427.1 | rsmI | AA314_05053 | AA314_05055 | Chromosome partition protein smc. | rRNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.642 |
AKJ03428.1 | AKJ00865.1 | AA314_05054 | AA314_02491 | Endonuclease; Belongs to the UPF0102 family. | Competence protein F like protein. | 0.783 |
AKJ03428.1 | AKJ01951.1 | AA314_05054 | AA314_03577 | Endonuclease; Belongs to the UPF0102 family. | FHA/GGDEF domain protein. | 0.452 |
AKJ03428.1 | AKJ02471.1 | AA314_05054 | AA314_04097 | Endonuclease; Belongs to the UPF0102 family. | Hypothetical protein. | 0.467 |
AKJ03428.1 | AKJ03427.1 | AA314_05054 | AA314_05053 | Endonuclease; Belongs to the UPF0102 family. | Chromosome partition protein smc. | 0.656 |
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