Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03442.1Rossmann fold nucleotide-binding protein Smf. (267 aa)    
Predicted Functional Partners:
AKJ03443.1
Inner membrane protein YqiK.
 
  
 0.950
AKI98473.1
Inner membrane protein YqiK.
 
  
 0.904
AKJ03444.1
Hypothetical protein.
 
     0.845
AKJ07433.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
 
    0.632
AKJ06761.1
Molybdate metabolism regulator.
  
     0.630
AKI99825.1
Hypothetical protein.
  
     0.578
AKI98418.1
Hypothetical protein.
  
     0.574
AKJ07649.1
Hypothetical protein.
  
     0.539
AKJ01561.1
Glycerate kinase.
  
     0.531
AKI98840.1
Hypothetical protein.
  
     0.524
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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