STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03447.1Transcriptional regulator, AsnC family. (79 aa)    
Predicted Functional Partners:
AKJ03446.1
Putative LINOLEOYL-CoA DESATURASE.
       0.737
AKJ02171.1
Hypothetical protein.
  
     0.532
AKJ03448.1
Sensor histidine kinase.
       0.470
AKJ07258.1
Glutamate synthase [NADPH] large chain.
     
 0.468
AKJ07071.1
Oxidoreductase FAD/NAD(P)-binding domain protein.
  
    0.467
AKJ06174.1
Hypothetical protein.
  
     0.446
AKJ00457.1
Hypothetical protein.
  
     0.445
AKJ05645.1
Salicylate hydroxylase.
  
     0.424
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
     0.417
AKJ04615.1
Transcriptional regulator, MarR family.
  
  
 0.416
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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